PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g124110.1.1
Common NameCBF2, LOC101263186
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 221aa    MW: 24597.7 Da    PI: 5.1518
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g124110.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.5e-1861111155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+G+r +  +g+Wv+e+r+p   +k++r++lg+f tae+Aa+a++ a+ +l+g
  Solyc03g124110.1.1  61 PVYRGIRKRN-SGKWVCEVREP---NKKTRIWLGTFPTAEMAARAHDVAAIALRG 111
                         68*****888.8******9998...347*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-1361111IPR001471AP2/ERF domain
SMARTSM003804.0E-3162125IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-2162121IPR016177DNA-binding domain
PROSITE profilePS5103222.35262119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-3262121IPR001471AP2/ERF domain
PRINTSPR003673.2E-96374IPR001471AP2/ERF domain
CDDcd000182.26E-3263121No hitNo description
PRINTSPR003673.2E-985101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDIFESYYSN SFVESLLSSS LSISDTNNLN HYSPNEEVII LASNNPKKPA GRKKFRETRH  60
PVYRGIRKRN SGKWVCEVRE PNKKTRIWLG TFPTAEMAAR AHDVAAIALR GRSACLNFAD  120
SVWRLPIPAS SNSKDIQKAA AEAAEIFRSE EVSGESPETS ENVQESSDFV DEEALFSMPG  180
LLANMAEGLM LPPPQCLEIG DHYVELADVH AYMPLWNYSI *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.83770.0callus| flower| fruit| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4978990.0Lycopersicon esculentum C-repeat binding factor gene locus, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234350.11e-164PREDICTED: dehydration-responsive element-binding protein 1A
SwissprotQ9FJ936e-73DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
SwissprotQ9M0L04e-73DRE1A_ARATH; Dehydration-responsive element-binding protein 1A
SwissprotQ9SYS64e-73DRE1C_ARATH; Dehydration-responsive element-binding protein 1C
TrEMBLQ674Z81e-164Q674Z8_SOLLC; CBF2
STRINGSolyc03g124110.1.11e-163(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.19e-74C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Zhang X, et al.
    Freezing-sensitive tomato has a functional CBF cold response pathway, but a CBF regulon that differs from that of freezing-tolerant Arabidopsis.
    Plant J., 2004. 39(6): p. 905-19
    [PMID:15341633]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]